Detailed information of SNP:
|
SNP ID:
sf0828047331(Gbrowse)
Chromosome: chr08 Position: 28047331 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.57% | 28.43% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 497 | 25.55% | 74.45% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828047331 | C->T | LOC_Os08g44600(LOC_Os08g44600.1) | INTRON |