Detailed information of SNP:
|
SNP ID:
sf0828070525(Gbrowse)
Chromosome: chr08 Position: 28070525 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 70.71% | 29.29% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 497 | 22.33% | 77.67% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 31.64% | 68.36% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828070525 | A->C | LOC_Os08g44640(LOC_Os08g44640.2) | INTRON |
| sf0828070525 | A->C | LOC_Os08g44640(LOC_Os08g44640.1) | INTRON |
| sf0828070525 | A->C | LOC_Os08g44640(LOC_Os08g44640.3) | INTRON |