Detailed information of SNP:
|
SNP ID:
sf0828075066(Gbrowse)
Chromosome: chr08 Position: 28075066 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 94.59% | 5.41% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 465 | 84.30% | 15.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 80.95% | 19.05% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 60 | 88.33% | 11.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828075066 | T->C | LOC_Os08g44660(LOC_Os08g44660.1) | INTRON |