Detailed information of SNP:
|
SNP ID:
sf0828196681(Gbrowse)
Chromosome: chr08 Position: 28196681 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 95.52% | 4.48% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 463 | 90.28% | 9.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 91.08% | 8.92% |
| Tropical Japonica | 87 | 97.70% | 2.30% |
| Japonica Intermediate | 62 | 75.81% | 24.19% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828196681 | G->A | INTERGENIC | None |