Detailed information of SNP:
|
SNP ID:
sf0828197316(Gbrowse)
Chromosome: chr08 Position: 28197316 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 58.47% | 41.53% |
| All Indica | 780 | 93.46% | 6.54% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 364 | 97.25% | 2.75% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 208 | 87.50% | 12.50% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828197316 | T->C | INTERGENIC | None |