Detailed information of SNP:
|
SNP ID:
sf0828202554(Gbrowse)
Chromosome: chr08 Position: 28202554 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1282 | 80.73% | 19.27% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 373 | 35.92% | 64.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 249 | 24.10% | 75.90% |
| Tropical Japonica | 75 | 48.00% | 52.00% |
| Japonica Intermediate | 49 | 77.55% | 22.45% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828202554 | T->C | INTERGENIC | None |