Detailed information of SNP:
|
SNP ID:
sf0828204626(Gbrowse)
Chromosome: chr08 Position: 28204626 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 77.47% | 22.53% |
| All Indica | 779 | 66.37% | 33.63% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 33.33% | 66.67% |
| Indica I | 364 | 72.25% | 27.75% |
| Indica II | 207 | 81.16% | 18.84% |
| Indica Intermediate | 208 | 41.35% | 58.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828204626 | G->A | INTERGENIC | None |