Detailed information of SNP:
|
SNP ID:
sf0828253494(Gbrowse)
Chromosome: chr08 Position: 28253494 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 60.67% | 39.33% |
| All Indica | 784 | 98.98% | 1.02% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 363 | 99.45% | 0.55% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828253494 | C->T | INTERGENIC | None |