Detailed information of SNP:
|
SNP ID:
sf0828305186(Gbrowse)
Chromosome: chr08 Position: 28305186 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1249 | 91.99% | 8.01% |
| All Indica | 791 | 95.07% | 4.93% |
| All Japonica | 339 | 83.78% | 16.22% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 95.68% | 4.32% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 230 | 76.96% | 23.04% |
| Tropical Japonica | 70 | 97.14% | 2.86% |
| Japonica Intermediate | 39 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828305186 | A->G | INTERGENIC | None |