Detailed information of SNP:
|
SNP ID:
sf0828398758(Gbrowse)
Chromosome: chr08 Position: 28398758 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 96.33% | 3.67% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828398758 | G->C | LOC_Os08g45240(LOC_Os08g45240.4) | INTRON |
| sf0828398758 | G->C | LOC_Os08g45240(LOC_Os08g45240.1) | INTRON |
| sf0828398758 | G->C | LOC_Os08g45240(LOC_Os08g45240.2) | INTRON |