Detailed information of SNP:
|
SNP ID:
sf0828399490(Gbrowse)
Chromosome: chr08 Position: 28399490 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 56.78% | 43.22% |
| All Indica | 789 | 89.61% | 10.39% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 369 | 93.77% | 6.23% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828399490 | C->T | LOC_Os08g45240(LOC_Os08g45240.4) | INTRON |
| sf0828399490 | C->T | LOC_Os08g45240(LOC_Os08g45240.1) | INTRON |
| sf0828399490 | C->T | LOC_Os08g45240(LOC_Os08g45240.2) | INTRON |