Detailed information of SNP:
|
SNP ID:
sf0828404221(Gbrowse)
Chromosome: chr08 Position: 28404221 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1283 | 84.02% | 15.98% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 372 | 47.31% | 52.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 257 | 51.75% | 48.25% |
| Tropical Japonica | 71 | 30.99% | 69.01% |
| Japonica Intermediate | 44 | 47.73% | 52.27% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 33 | 87.88% | 12.12% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828404221 | A->T | LOC_Os08g45240(LOC_Os08g45240.4) | INTRON |
| sf0828404221 | A->T | LOC_Os08g45240(LOC_Os08g45240.1) | INTRON |
| sf0828404221 | A->T | LOC_Os08g45240(LOC_Os08g45240.3) | UTR_3_PRIME |
| sf0828404221 | A->T | LOC_Os08g45240(LOC_Os08g45240.2) | INTRON |