Detailed information of SNP:
|
SNP ID:
sf0828434271(Gbrowse)
Chromosome: chr08 Position: 28434271 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1369 | 78.52% | 21.48% |
| All Indica | 752 | 62.23% | 37.77% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 356 | 59.27% | 40.73% |
| Indica II | 196 | 62.76% | 37.24% |
| Indica Intermediate | 200 | 67.00% | 33.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828434271 | A->G | INTERGENIC | None |