Detailed information of SNP:
|
SNP ID:
sf0900042120(Gbrowse)
Chromosome: chr09 Position: 42120 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.73% | 38.27% |
| All Indica | 799 | 36.67% | 63.33% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 44.27% | 55.73% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900042120 | G->A | LOC_Os09g01006(LOC_Os09g01006.1) | Non-Synonymous SNP |