Detailed information of SNP:
|
SNP ID:
sf0900042410(Gbrowse)
Chromosome: chr09 Position: 42410 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.19% | 38.81% |
| All Indica | 799 | 36.05% | 63.95% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 43.47% | 56.53% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900042410 | G->A | INTERGENIC | None |