Detailed information of SNP:
|
SNP ID:
sf0900043024(Gbrowse)
Chromosome: chr09 Position: 43024 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 61.98% | 38.02% |
| All Indica | 797 | 36.89% | 63.11% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 44.12% | 55.88% |
| Indica II | 212 | 39.15% | 60.85% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900043024 | G->A | INTERGENIC | None |