Detailed information of SNP:
|
SNP ID:
sf0900043105(Gbrowse)
Chromosome: chr09 Position: 43105 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.23% | 37.77% |
| All Indica | 799 | 37.17% | 62.83% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 44.80% | 55.20% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900043105 | G->T | INTERGENIC | None |