Detailed information of SNP:
|
SNP ID:
sf0900061816(Gbrowse)
Chromosome: chr09 Position: 61816 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 71.37% | 28.63% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 477 | 20.75% | 79.25% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 318 | 27.67% | 72.33% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900061816 | A->G | INTERGENIC | None |