Detailed information of SNP:
|
SNP ID:
sf0900071657(Gbrowse)
Chromosome: chr09 Position: 71657 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 95.06% | 4.94% |
| All Indica | 758 | 91.16% | 8.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 352 | 87.50% | 12.50% |
| Indica II | 205 | 96.10% | 3.90% |
| Indica Intermediate | 201 | 92.54% | 7.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900071657 | C->T | LOC_Os09g01040(LOC_Os09g01040.1) | Synonymous |