Detailed information of SNP:
|
SNP ID:
sf0900073355(Gbrowse)
Chromosome: chr09 Position: 73355 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 51.10% | 48.90% |
| All Indica | 747 | 17.94% | 82.06% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 61 | 45.90% | 54.10% |
| Indica I | 347 | 22.19% | 77.81% |
| Indica II | 202 | 14.85% | 85.15% |
| Indica Intermediate | 198 | 13.64% | 86.36% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900073355 | G->A | LOC_Os09g01040(LOC_Os09g01040.1) | Synonymous |