Detailed information of SNP:
|
SNP ID:
sf0900073360(Gbrowse)
Chromosome: chr09 Position: 73360 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 50.26% | 49.74% |
| All Indica | 755 | 16.82% | 83.18% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 60 | 45.00% | 55.00% |
| Indica I | 352 | 21.31% | 78.69% |
| Indica II | 204 | 12.75% | 87.25% |
| Indica Intermediate | 199 | 13.07% | 86.93% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900073360 | G->T | LOC_Os09g01040(LOC_Os09g01040.1) | Non-Synonymous SNP |