Detailed information of SNP:
|
SNP ID:
sf0900105167(Gbrowse)
Chromosome: chr09 Position: 105167 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 95.79% | 4.21% |
| All Indica | 766 | 94.65% | 5.35% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 367 | 97.55% | 2.45% |
| Indica II | 200 | 88.00% | 12.00% |
| Indica Intermediate | 199 | 95.98% | 4.02% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900105167 | G->A | INTERGENIC | None |