Detailed information of SNP:
|
SNP ID:
sf0900107422(Gbrowse)
Chromosome: chr09 Position: 107422 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 98.01% | 1.99% |
| All Indica | 789 | 96.83% | 3.17% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 96.23% | 3.77% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900107422 | T->A | INTERGENIC | None |