Detailed information of SNP:
|
SNP ID:
sf0900125135(Gbrowse)
Chromosome: chr09 Position: 125135 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 56.96% | 43.04% |
| All Indica | 768 | 86.98% | 13.02% |
| All Japonica | 472 | 2.75% | 97.25% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 359 | 88.86% | 11.14% |
| Indica II | 206 | 83.98% | 16.02% |
| Indica Intermediate | 203 | 86.70% | 13.30% |
| Temperate Japonica | 312 | 3.53% | 96.47% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900125135 | C->T | INTERGENIC | None |