Detailed information of SNP:
|
SNP ID:
sf0900145158(Gbrowse)
Chromosome: chr09 Position: 145158 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 59.07% | 40.93% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900145158 | G->A | INTERGENIC | None |