Detailed information of SNP:
|
SNP ID:
sf0900166697(Gbrowse)
Chromosome: chr09 Position: 166697 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 97.27% | 2.73% |
| All Indica | 774 | 95.87% | 4.13% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 358 | 94.41% | 5.59% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900166697 | C->T | LOC_Os09g01170(LOC_Os09g01170.1) | INTRON |