Detailed information of SNP:
|
SNP ID:
sf0900239275(Gbrowse)
Chromosome: chr09 Position: 239275 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 68.79% | 31.21% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 488 | 23.98% | 76.02% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 327 | 34.86% | 65.14% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900239275 | A->G | LOC_Os09g01280(LOC_Os09g01280.1) | Non-Synonymous SNP |