Detailed information of SNP:
|
SNP ID:
sf0900239306(Gbrowse)
Chromosome: chr09 Position: 239306 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 94.96% | 5.04% |
| All Indica | 734 | 93.73% | 6.27% |
| All Japonica | 493 | 98.58% | 1.42% |
| Aus | 50 | 72.00% | 28.00% |
| Indica I | 356 | 95.79% | 4.21% |
| Indica II | 182 | 90.11% | 9.89% |
| Indica Intermediate | 196 | 93.37% | 6.63% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900239306 | C->T | LOC_Os09g01280(LOC_Os09g01280.1) | Synonymous |