Detailed information of SNP:
|
SNP ID:
sf0900256645(Gbrowse)
Chromosome: chr09 Position: 256645 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 68.85% | 31.15% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 25.96% | 74.04% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 37.31% | 62.69% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900256645 | A->G | INTERGENIC | None |