Detailed information of SNP:
|
SNP ID:
sf0900272978(Gbrowse)
Chromosome: chr09 Position: 272978 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 96.28% | 3.72% |
| All Indica | 781 | 94.75% | 5.25% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 367 | 98.91% | 1.09% |
| Indica II | 207 | 85.02% | 14.98% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900272978 | C->T | LOC_Os09g01340(LOC_Os09g01340.1) | Synonymous |