Detailed information of SNP:
|
SNP ID:
sf0900273113(Gbrowse)
Chromosome: chr09 Position: 273113 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 59.93% | 40.07% |
| All Indica | 772 | 37.82% | 62.18% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 354 | 36.16% | 63.84% |
| Indica II | 209 | 43.54% | 56.46% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900273113 | A->G | LOC_Os09g01340(LOC_Os09g01340.1) | Synonymous |