Detailed information of SNP:
|
SNP ID:
sf0900273248(Gbrowse)
Chromosome: chr09 Position: 273248 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1304 | 78.99% | 21.01% |
| All Indica | 702 | 66.95% | 33.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 52 | 30.77% | 69.23% |
| Indica I | 328 | 71.04% | 28.96% |
| Indica II | 191 | 68.06% | 31.94% |
| Indica Intermediate | 183 | 58.47% | 41.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900273248 | A->C | LOC_Os09g01340(LOC_Os09g01340.1) | Synonymous |