Detailed information of SNP:
|
SNP ID:
sf0900274108(Gbrowse)
Chromosome: chr09 Position: 274108 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 95.90% | 4.10% |
| All Indica | 773 | 93.79% | 6.21% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 361 | 93.63% | 6.37% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 202 | 91.58% | 8.42% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900274108 | T->C | LOC_Os09g01340(LOC_Os09g01340.1) | Synonymous |