Detailed information of SNP:
|
SNP ID:
sf0900274938(Gbrowse)
Chromosome: chr09 Position: 274938 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 65.87% | 34.13% |
| All Indica | 731 | 43.64% | 56.36% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 59 | 50.85% | 49.15% |
| Indica I | 343 | 55.10% | 44.90% |
| Indica II | 201 | 18.41% | 81.59% |
| Indica Intermediate | 187 | 49.73% | 50.27% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900274938 | C->T | LOC_Os09g01340(LOC_Os09g01340.1) | Non-Synonymous SNP |