Detailed information of SNP:
|
SNP ID:
sf0900279117(Gbrowse)
Chromosome: chr09 Position: 279117 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 55.44% | 44.56% |
| All Indica | 776 | 84.79% | 15.21% |
| All Japonica | 491 | 6.92% | 93.08% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 361 | 78.95% | 21.05% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 203 | 83.74% | 16.26% |
| Temperate Japonica | 329 | 9.42% | 90.58% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900279117 | A->G | LOC_Os09g01350(LOC_Os09g01350.1) | Non-Synonymous SNP |