Detailed information of SNP:
|
SNP ID:
sf0900279507(Gbrowse)
Chromosome: chr09 Position: 279507 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 85.03% | 14.97% |
| All Indica | 786 | 75.45% | 24.55% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 365 | 70.14% | 29.86% |
| Indica II | 211 | 81.04% | 18.96% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900279507 | A->G | LOC_Os09g01350(LOC_Os09g01350.1) | Synonymous |