Detailed information of SNP:
|
SNP ID:
sf0900279526(Gbrowse)
Chromosome: chr09 Position: 279526 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 57.84% | 42.16% |
| All Indica | 788 | 88.20% | 11.80% |
| All Japonica | 486 | 6.79% | 93.21% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 368 | 85.33% | 14.67% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 208 | 85.10% | 14.90% |
| Temperate Japonica | 324 | 9.26% | 90.74% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900279526 | A->G | LOC_Os09g01350(LOC_Os09g01350.1) | Non-Synonymous SNP |