Detailed information of SNP:
|
SNP ID:
sf0900279849(Gbrowse)
Chromosome: chr09 Position: 279849 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 58.55% | 41.45% |
| All Indica | 794 | 89.29% | 10.71% |
| All Japonica | 492 | 6.91% | 93.09% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 86.83% | 13.17% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 330 | 9.39% | 90.61% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900279849 | T->G | LOC_Os09g01350(LOC_Os09g01350.1) | Non-Synonymous SNP |