Detailed information of SNP:



SNP ID: sf0900283647(Gbrowse)

Chromosome: chr09

Position: 283647
Major allele: C

Minor allele: G

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of G(minor allele)
All1419 58.14% 41.86%
All Indica799 35.42% 64.58%
All Japonica497 100.00% 0.00%
Aus67 1.49% 98.51%
Indica I375 23.73% 76.27%
Indica II213 60.56% 39.44%
Indica Intermediate211 30.81% 69.19%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0900283647 C->G INTERGENIC None