Detailed information of SNP:
SNP ID:
sf0900283647(Gbrowse)
Chromosome: chr09 Position: 283647 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 58.14% | 41.86% |
All Indica | 799 | 35.42% | 64.58% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 1.49% | 98.51% |
Indica I | 375 | 23.73% | 76.27% |
Indica II | 213 | 60.56% | 39.44% |
Indica Intermediate | 211 | 30.81% | 69.19% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0900283647 | C->G | INTERGENIC | None |