Detailed information of SNP:
|
SNP ID:
sf0900317728(Gbrowse)
Chromosome: chr09 Position: 317728 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1275 | 65.02% | 34.98% |
| All Indica | 671 | 38.75% | 61.25% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 57 | 61.40% | 38.60% |
| Indica I | 305 | 38.69% | 61.31% |
| Indica II | 185 | 40.00% | 60.00% |
| Indica Intermediate | 181 | 37.57% | 62.43% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900317728 | A->G | INTERGENIC | None |