Detailed information of SNP:
|
SNP ID:
sf0900335793(Gbrowse)
Chromosome: chr09 Position: 335793 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 78.78% | 21.22% |
| All Indica | 765 | 64.44% | 35.56% |
| All Japonica | 489 | 97.14% | 2.86% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 363 | 77.96% | 22.04% |
| Indica II | 200 | 51.00% | 49.00% |
| Indica Intermediate | 202 | 53.47% | 46.53% |
| Temperate Japonica | 328 | 95.73% | 4.27% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900335793 | G->A | LOC_Os09g01450(LOC_Os09g01450.1) | Synonymous |