Detailed information of SNP:
|
SNP ID:
sf0900335799(Gbrowse)
Chromosome: chr09 Position: 335799 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 80.62% | 19.38% |
| All Indica | 774 | 66.02% | 33.98% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 367 | 79.02% | 20.98% |
| Indica II | 204 | 52.94% | 47.06% |
| Indica Intermediate | 203 | 55.67% | 44.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900335799 | C->T | LOC_Os09g01450(LOC_Os09g01450.1) | Synonymous |