Detailed information of SNP:
|
SNP ID:
sf0900336327(Gbrowse)
Chromosome: chr09 Position: 336327 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 80.69% | 19.31% |
| All Indica | 782 | 66.37% | 33.63% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 365 | 80.27% | 19.73% |
| Indica II | 209 | 54.55% | 45.45% |
| Indica Intermediate | 208 | 53.85% | 46.15% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900336327 | A->G | LOC_Os09g01450(LOC_Os09g01450.1) | INTRON |