Detailed information of SNP:
|
SNP ID:
sf0900336342(Gbrowse)
Chromosome: chr09 Position: 336342 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 80.91% | 19.09% |
| All Indica | 781 | 67.09% | 32.91% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 366 | 80.87% | 19.13% |
| Indica II | 209 | 54.55% | 45.45% |
| Indica Intermediate | 206 | 55.34% | 44.66% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900336342 | A->G | LOC_Os09g01450(LOC_Os09g01450.1) | INTRON |