Detailed information of SNP:
|
SNP ID:
sf0900338005(Gbrowse)
Chromosome: chr09 Position: 338005 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 53.20% | 46.80% |
| All Indica | 787 | 82.72% | 17.28% |
| All Japonica | 482 | 6.22% | 93.78% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 365 | 80.27% | 19.73% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 320 | 8.44% | 91.56% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900338005 | C->T | LOC_Os09g01450(LOC_Os09g01450.1) | INTRON |