Detailed information of SNP:
|
SNP ID:
sf0900340874(Gbrowse)
Chromosome: chr09 Position: 340874 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1264 | 95.89% | 4.11% |
| All Indica | 666 | 92.34% | 7.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 49 | 97.96% | 2.04% |
| Indica I | 311 | 94.21% | 5.79% |
| Indica II | 190 | 95.79% | 4.21% |
| Indica Intermediate | 165 | 84.85% | 15.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900340874 | C->T | INTERGENIC | None |