Detailed information of SNP:
|
SNP ID:
sf0900354549(Gbrowse)
Chromosome: chr09 Position: 354549 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 95.50% | 4.50% |
| All Indica | 794 | 96.10% | 3.90% |
| All Japonica | 489 | 96.52% | 3.48% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 328 | 95.12% | 4.88% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 10 | 60.00% | 40.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900354549 | T->C | LOC_Os09g01480(LOC_Os09g01480.1) | Synonymous |