Detailed information of SNP:
|
SNP ID:
sf0900359701(Gbrowse)
Chromosome: chr09 Position: 359701 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1259 | 70.29% | 29.71% |
| All Indica | 663 | 49.62% | 50.38% |
| All Japonica | 490 | 99.18% | 0.82% |
| Aus | 54 | 48.15% | 51.85% |
| Indica I | 307 | 58.31% | 41.69% |
| Indica II | 179 | 35.20% | 64.80% |
| Indica Intermediate | 177 | 49.15% | 50.85% |
| Temperate Japonica | 329 | 99.09% | 0.91% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900359701 | G->A | LOC_Os09g01490(LOC_Os09g01490.1) | Synonymous |