Detailed information of SNP:



SNP ID: sf0900359701(Gbrowse)

Chromosome: chr09

Position: 359701
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1259 70.29% 29.71%
All Indica663 49.62% 50.38%
All Japonica490 99.18% 0.82%
Aus54 48.15% 51.85%
Indica I307 58.31% 41.69%
Indica II179 35.20% 64.80%
Indica Intermediate177 49.15% 50.85%
Temperate Japonica329 99.09% 0.91%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate67 98.51% 1.49%
Group VI/Aromatic14 100.00% 0.00%
Intermediate38 78.95% 21.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0900359701 G->A LOC_Os09g01490(LOC_Os09g01490.1) Synonymous