Detailed information of SNP:
|
SNP ID:
sf0900370978(Gbrowse)
Chromosome: chr09 Position: 370978 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 54.30% | 45.70% |
| All Indica | 730 | 26.16% | 73.84% |
| All Japonica | 493 | 98.78% | 1.22% |
| Aus | 60 | 20.00% | 80.00% |
| Indica I | 335 | 30.45% | 69.55% |
| Indica II | 200 | 22.00% | 78.00% |
| Indica Intermediate | 195 | 23.08% | 76.92% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900370978 | A->G | INTERGENIC | None |