Detailed information of SNP:
|
SNP ID:
sf0900380058(Gbrowse)
Chromosome: chr09 Position: 380058 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 97.45% | 2.55% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 489 | 93.46% | 6.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 68.54% | 31.46% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0900380058 | C->T | LOC_Os09g01530(LOC_Os09g01530.1) | Non-Synonymous SNP |